Swami

Page history last edited by Anonymous 1 yr ago

 

Swami - The Next Generation Biology Workbench

Summary

Type of tool

Framework with tools

Function

Gene data manipulation

Online / Desktop

Online

Computer infrastructure

Web browser

Development status

Active development, in draft release. Version 0.9,  October 2007

Time of use

As a post process, when data is with user

Licence

Free for research and education

The Next Generation Biology Workbench is a set of tools for gene data manipulation and analysis

 

Description

The Next Generation Biology Workbench is a free resource for research and education in Bioinformatics, Genomics, Proteomics, and Phylogenetics.

 

This is a resource that is easy to use, and can accomplish many different kinds of tasks. The toolkit is small today, but will grow quickly. We expect to release between 100 and 200 tools in December (2007), along with new databases and improved data and tool handling semantics.1

 

Tools

  • BLAST (v2.214)
  • Boxshade (v3.3.1)
  • CLIQUE (v3.682)
  • ClustalW (v1.82)
  • CONSENSE (v3.682)
  • DNADIST (v3.682)
  • DNAPARS (v3.682)
  • DOLLOP (v3.682)
  • MFOLD (v3.1.2)
  • MIX (v3.682)
  • PARS (v3.682)
  • PROTDIST (v3.682)
  • PROTPARS (v3.682)
  • PSIBLAST (v2.2.1)
  • SEQBOOT (v3.682)
  • UNROOT (v3.682)
  • SIRIUSWB

 

Swami will support protein structure investigations and allow file sharing.2

Discrete analytical tasks can be chained.

 

Function

  • Analysis tools
  • User interface
    • Personal use
    • Can produce reports, web pages, further data sets

 

Why use this tool?

  • Gene sequence analysis

 

Who will use this tool?

  • Data users
    • Expert

 

How will the tool be used?

  • Online tool, accessible through most browsers 3
  • User input is required

 

Where in the data chain could this tool be used?

  • User’s machine

 

When could this tool be used?

  • As a post process, after data is with the user

 

Availability

 

Comments

 

 

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